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The Arabidopsis PHD-finger protein EDM2 has multiple roles in balancing NLR immune receptor gene expression.

Identifieur interne : 000038 ( Main/Exploration ); précédent : 000037; suivant : 000039

The Arabidopsis PHD-finger protein EDM2 has multiple roles in balancing NLR immune receptor gene expression.

Auteurs : Yan Lai [États-Unis, République populaire de Chine] ; Xueqing Maggie Lu [États-Unis] ; Josquin Daron [États-Unis] ; Songqin Pan [États-Unis] ; Jianqiang Wang [États-Unis] ; Wei Wang [États-Unis] ; Tokuji Tsuchiya [Japon] ; Eric Holub [Royaume-Uni] ; John M. Mcdowell [États-Unis] ; R Keith Slotkin [États-Unis] ; Karine G. Le Roch [États-Unis] ; Thomas Eulgem [États-Unis]

Source :

RBID : pubmed:32925902

Descripteurs français

English descriptors

Abstract

Plant NLR-type receptors serve as sensitive triggers of host immunity. Their expression has to be well-balanced, due to their interference with various cellular processes and dose-dependency of their defense-inducing activity. A genetic "arms race" with fast-evolving pathogenic microbes requires plants to constantly innovate their NLR repertoires. We previously showed that insertion of the COPIA-R7 retrotransposon into RPP7 co-opted the epigenetic transposon silencing signal H3K9me2 to a new function promoting expression of this Arabidopsis thaliana NLR gene. Recruitment of the histone binding protein EDM2 to COPIA-R7-associated H3K9me2 is required for optimal expression of RPP7. By profiling of genome-wide effects of EDM2, we now uncovered additional examples illustrating effects of transposons on NLR gene expression, strongly suggesting that these mobile elements can play critical roles in the rapid evolution of plant NLR genes by providing the "raw material" for gene expression mechanisms. We further found EDM2 to have a global role in NLR expression control. Besides serving as a positive regulator of RPP7 and a small number of other NLR genes, EDM2 acts as a suppressor of a multitude of additional NLR genes. We speculate that the dual functionality of EDM2 in NLR expression control arose from the need to compensate for fitness penalties caused by high expression of some NLR genes by suppression of others. Moreover, we are providing new insights into functional relationships of EDM2 with its interaction partner, the RNA binding protein EDM3/AIPP1, and its target gene IBM1, encoding an H3K9-demethylase.

DOI: 10.1371/journal.pgen.1008993
PubMed: 32925902
PubMed Central: PMC7529245


Affiliations:


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<name sortKey="Wang, Wei" sort="Wang, Wei" uniqKey="Wang W" first="Wei" last="Wang">Wei Wang</name>
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<term>Arabidopsis (MeSH)</term>
<term>Arabidopsis Proteins (genetics)</term>
<term>Arabidopsis Proteins (metabolism)</term>
<term>Epigenesis, Genetic (MeSH)</term>
<term>Gene Expression (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genes, Plant (MeSH)</term>
<term>Jumonji Domain-Containing Histone Demethylases (genetics)</term>
<term>Jumonji Domain-Containing Histone Demethylases (metabolism)</term>
<term>NLR Proteins (biosynthesis)</term>
<term>NLR Proteins (genetics)</term>
<term>NLR Proteins (metabolism)</term>
<term>PHD Zinc Fingers (MeSH)</term>
<term>Plants, Genetically Modified (MeSH)</term>
<term>Protein Domains (MeSH)</term>
<term>RNA-Binding Proteins (genetics)</term>
<term>Receptors, Immunologic (genetics)</term>
<term>Transcription Factors (genetics)</term>
<term>Transcription Factors (metabolism)</term>
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<term>Arabidopsis (MeSH)</term>
<term>Doigts de zinc PHD (MeSH)</term>
<term>Domaines protéiques (MeSH)</term>
<term>Expression des gènes (MeSH)</term>
<term>Facteurs de transcription (génétique)</term>
<term>Facteurs de transcription (métabolisme)</term>
<term>Gènes de plante (MeSH)</term>
<term>Jumonji Domain-Containing Histone Demethylases (génétique)</term>
<term>Jumonji Domain-Containing Histone Demethylases (métabolisme)</term>
<term>Protéines NLR (biosynthèse)</term>
<term>Protéines NLR (génétique)</term>
<term>Protéines NLR (métabolisme)</term>
<term>Protéines d'Arabidopsis (génétique)</term>
<term>Protéines d'Arabidopsis (métabolisme)</term>
<term>Protéines de liaison à l'ARN (génétique)</term>
<term>Récepteurs immunologiques (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Végétaux génétiquement modifiés (MeSH)</term>
<term>Épigenèse génétique (MeSH)</term>
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<term>NLR Proteins</term>
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<term>Jumonji Domain-Containing Histone Demethylases</term>
<term>NLR Proteins</term>
<term>RNA-Binding Proteins</term>
<term>Receptors, Immunologic</term>
<term>Transcription Factors</term>
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<term>Arabidopsis Proteins</term>
<term>Jumonji Domain-Containing Histone Demethylases</term>
<term>NLR Proteins</term>
<term>Transcription Factors</term>
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<term>Protéines NLR</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Facteurs de transcription</term>
<term>Jumonji Domain-Containing Histone Demethylases</term>
<term>Protéines NLR</term>
<term>Protéines d'Arabidopsis</term>
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<term>Récepteurs immunologiques</term>
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<term>Facteurs de transcription</term>
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<term>Protéines d'Arabidopsis</term>
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<term>Gene Expression</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genes, Plant</term>
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<term>Arabidopsis</term>
<term>Doigts de zinc PHD</term>
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<term>Expression des gènes</term>
<term>Gènes de plante</term>
<term>Régulation de l'expression des gènes végétaux</term>
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<div type="abstract" xml:lang="en">Plant NLR-type receptors serve as sensitive triggers of host immunity. Their expression has to be well-balanced, due to their interference with various cellular processes and dose-dependency of their defense-inducing activity. A genetic "arms race" with fast-evolving pathogenic microbes requires plants to constantly innovate their NLR repertoires. We previously showed that insertion of the COPIA-R7 retrotransposon into RPP7 co-opted the epigenetic transposon silencing signal H3K9me2 to a new function promoting expression of this Arabidopsis thaliana NLR gene. Recruitment of the histone binding protein EDM2 to COPIA-R7-associated H3K9me2 is required for optimal expression of RPP7. By profiling of genome-wide effects of EDM2, we now uncovered additional examples illustrating effects of transposons on NLR gene expression, strongly suggesting that these mobile elements can play critical roles in the rapid evolution of plant NLR genes by providing the "raw material" for gene expression mechanisms. We further found EDM2 to have a global role in NLR expression control. Besides serving as a positive regulator of RPP7 and a small number of other NLR genes, EDM2 acts as a suppressor of a multitude of additional NLR genes. We speculate that the dual functionality of EDM2 in NLR expression control arose from the need to compensate for fitness penalties caused by high expression of some NLR genes by suppression of others. Moreover, we are providing new insights into functional relationships of EDM2 with its interaction partner, the RNA binding protein EDM3/AIPP1, and its target gene IBM1, encoding an H3K9-demethylase.</div>
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<AbstractText>Plant NLR-type receptors serve as sensitive triggers of host immunity. Their expression has to be well-balanced, due to their interference with various cellular processes and dose-dependency of their defense-inducing activity. A genetic "arms race" with fast-evolving pathogenic microbes requires plants to constantly innovate their NLR repertoires. We previously showed that insertion of the COPIA-R7 retrotransposon into RPP7 co-opted the epigenetic transposon silencing signal H3K9me2 to a new function promoting expression of this Arabidopsis thaliana NLR gene. Recruitment of the histone binding protein EDM2 to COPIA-R7-associated H3K9me2 is required for optimal expression of RPP7. By profiling of genome-wide effects of EDM2, we now uncovered additional examples illustrating effects of transposons on NLR gene expression, strongly suggesting that these mobile elements can play critical roles in the rapid evolution of plant NLR genes by providing the "raw material" for gene expression mechanisms. We further found EDM2 to have a global role in NLR expression control. Besides serving as a positive regulator of RPP7 and a small number of other NLR genes, EDM2 acts as a suppressor of a multitude of additional NLR genes. We speculate that the dual functionality of EDM2 in NLR expression control arose from the need to compensate for fitness penalties caused by high expression of some NLR genes by suppression of others. Moreover, we are providing new insights into functional relationships of EDM2 with its interaction partner, the RNA binding protein EDM3/AIPP1, and its target gene IBM1, encoding an H3K9-demethylase.</AbstractText>
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<ForeName>Yan</ForeName>
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<Affiliation>Center for Plant Cell Biology, Institute of Integrative Genome Biology, Department of Botany and Plan Sciences, University of California at Riverside, Riverside, CA, United States of America.</Affiliation>
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<AffiliationInfo>
<Affiliation>College of Life Sciences, Fujian Agricultural and Forestry University, Fuzhou, Fujian, China.</Affiliation>
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<LastName>Lu</LastName>
<ForeName>Xueqing Maggie</ForeName>
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<Affiliation>Center for Infectious Disease and Vector Research, Institute of Integrative Genome Biology, Department of Molecular, Cell and Systems Biology, University of California at Riverside, Riverside, CA, United States of America.</Affiliation>
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<ForeName>Josquin</ForeName>
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<Affiliation>Department of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America.</Affiliation>
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<LastName>Pan</LastName>
<ForeName>Songqin</ForeName>
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<Affiliation>Center for Plant Cell Biology, Institute of Integrative Genome Biology, Department of Botany and Plan Sciences, University of California at Riverside, Riverside, CA, United States of America.</Affiliation>
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<Affiliation>Department of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, VA, United States of America.</Affiliation>
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<LastName>Tsuchiya</LastName>
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<ForeName>John M</ForeName>
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<Affiliation>Department of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, VA, United States of America.</Affiliation>
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<Affiliation>Department of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America.</Affiliation>
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<AffiliationInfo>
<Affiliation>Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America.</Affiliation>
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<AffiliationInfo>
<Affiliation>Division of Biological Sciences, University of Missouri, Columbia, Missouri, United States of America.</Affiliation>
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<ForeName>Karine G</ForeName>
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<Affiliation>Center for Infectious Disease and Vector Research, Institute of Integrative Genome Biology, Department of Molecular, Cell and Systems Biology, University of California at Riverside, Riverside, CA, United States of America.</Affiliation>
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<LastName>Eulgem</LastName>
<ForeName>Thomas</ForeName>
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<Identifier Source="ORCID">0000-0002-8421-2988</Identifier>
<AffiliationInfo>
<Affiliation>Center for Plant Cell Biology, Institute of Integrative Genome Biology, Department of Botany and Plan Sciences, University of California at Riverside, Riverside, CA, United States of America.</Affiliation>
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<ArticleId IdType="pubmed">32925902</ArticleId>
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<ArticleId IdType="pii">PGENETICS-D-19-01617</ArticleId>
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</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>Bioinformatics. 2009 Jul 15;25(14):1754-60</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19451168</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Rev Genet. 2014 Jun;15(6):394-408</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24805120</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2000 Feb 15;97(4):1908-13</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10660679</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2016 Mar 17;12(3):e1005452</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26986469</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Curr Opin Genet Dev. 2015 Dec;35:57-65</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26451981</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):527-32</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24248388</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2003 Aug;15(8):1771-80</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12897251</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2018 Nov 1;9(1):4561</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">30385760</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genes Dev. 2002 Jan 15;16(2):171-82</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11799061</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1790-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22307647</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Biol. 2014 Sep 17;15(9):458</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25228471</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2015 Mar 06;6:6338</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25744164</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):E3578-E3587</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29581258</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2006 May;18(5):1166-76</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16582009</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Physiol. 2019 May;180(1):392-403</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">30814131</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2002 Aug;14(8):1903-17</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12172030</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Rev Genet. 2010 Mar;11(3):204-20</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20142834</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15467-72</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24003136</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 1999 Nov;11(11):2099-112</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10559437</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Arabidopsis Book. 2002;1:e0039</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22303207</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Front Immunol. 2013 Sep 25;4:297</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24093022</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genet Mol Biol. 2010 Jan;33(1):135-40</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21637617</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Biol. 2014;15(12):550</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25516281</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2003 Apr;15(4):809-34</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12671079</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Plant Microbe Interact. 2011 Dec;24(12):1573-81</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21830950</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2008 Sep 08;3(9):e3156</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18776934</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>EMBO J. 2018 Jul 13;37(14):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29871888</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2019 Feb;97(4):646-660</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">30407670</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Res. 2009 Jan;19(1):42-56</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19037014</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genetics. 2006 Jul;173(3):1613-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16648590</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):E3535-43</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23940361</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2012 Sep 28;151(1):167-80</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23021223</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2000 Jun;22(6):523-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10886772</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochim Biophys Acta. 2015 Apr;1849(4):403-16</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25086340</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>EMBO J. 2012 Jun 29;31(13):2981-93</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22580822</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Ecol. 2013 Mar;22(6):1503-17</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23293987</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2016 Dec 2;354(6316):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27934708</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Struct Mol Biol. 2014 Jan;21(1):64-72</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24336224</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2013;4:2301</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23934508</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Res. 1998 Nov;8(11):1113-30</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9847076</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2018 Mar 1;9(1):895</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29497035</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2004 Dec;16(12):3480-95</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15548741</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2389-94</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23335630</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2018 Oct 31;9(1):4547</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">30382101</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Plant Microbe Interact. 2010 Oct;23(10):1303-15</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20831409</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2001 May;26(4):395-407</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11439127</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2009 Feb;57(3):413-25</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18808453</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Plant Pathol. 2018 May;19(5):1267-1281</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28834153</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2005 Aug 5;309(5736):929-32</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15976272</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Sci Rep. 2013;3:1701</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23609044</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2012 Mar;24(3):859-74</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22408077</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2008 Jan 25;319(5862):462-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18218897</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Physiol. 2011 Oct;157(2):757-69</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21810963</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Cell. 2017 Apr;29(4):666-680</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28320784</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2012 Feb;69(3):411-20</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21967323</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>EMBO J. 2010 Oct 20;29(20):3496-506</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20834229</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Gene. 2017 Aug 30;626:14-25</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28476688</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):E7377-E7384</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28808009</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14694-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21873230</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Biotechnol. 2011 Jan;29(1):24-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21221095</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2002 Feb;29(4):439-51</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11846877</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Plant Microbe Interact. 2007 Nov;20(11):1449-56</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17977156</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Plant Biol. 2010 Aug 13;10:175</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20707904</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genes Dev. 2011 Dec 1;25(23):2540-53</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22156213</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Methods. 2015 Apr;12(4):357-60</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25751142</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genetics. 2002 Apr;160(4):1661-71</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11973319</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2004 Jun;38(6):898-909</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15165183</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2007 Mar;49(5):829-39</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17253987</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Biol Evol. 2016 Oct;33(10):2692-705</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27512116</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Front Plant Sci. 2019 Dec 18;10:1587</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">31956325</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Plant Pathol. 2006 Sep;7(5):437-48</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20507459</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2010 Mar 15;26(6):841-2</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20110278</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Plant Biol. 2010 Sep 14;10:203</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20840782</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Phytopathol. 2012;50:91-109</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22559067</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>EMBO J. 2009 Apr 22;28(8):1078-86</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19262562</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant J. 2010 May;62(3):518-28</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20149132</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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<list>
<country>
<li>Japon</li>
<li>Royaume-Uni</li>
<li>République populaire de Chine</li>
<li>États-Unis</li>
</country>
<region>
<li>Californie</li>
<li>Missouri (État)</li>
<li>Ohio</li>
<li>Virginie</li>
</region>
</list>
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<country name="États-Unis">
<region name="Californie">
<name sortKey="Lai, Yan" sort="Lai, Yan" uniqKey="Lai Y" first="Yan" last="Lai">Yan Lai</name>
</region>
<name sortKey="Daron, Josquin" sort="Daron, Josquin" uniqKey="Daron J" first="Josquin" last="Daron">Josquin Daron</name>
<name sortKey="Eulgem, Thomas" sort="Eulgem, Thomas" uniqKey="Eulgem T" first="Thomas" last="Eulgem">Thomas Eulgem</name>
<name sortKey="Le Roch, Karine G" sort="Le Roch, Karine G" uniqKey="Le Roch K" first="Karine G" last="Le Roch">Karine G. Le Roch</name>
<name sortKey="Lu, Xueqing Maggie" sort="Lu, Xueqing Maggie" uniqKey="Lu X" first="Xueqing Maggie" last="Lu">Xueqing Maggie Lu</name>
<name sortKey="Mcdowell, John M" sort="Mcdowell, John M" uniqKey="Mcdowell J" first="John M" last="Mcdowell">John M. Mcdowell</name>
<name sortKey="Pan, Songqin" sort="Pan, Songqin" uniqKey="Pan S" first="Songqin" last="Pan">Songqin Pan</name>
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<name sortKey="Wang, Jianqiang" sort="Wang, Jianqiang" uniqKey="Wang J" first="Jianqiang" last="Wang">Jianqiang Wang</name>
<name sortKey="Wang, Wei" sort="Wang, Wei" uniqKey="Wang W" first="Wei" last="Wang">Wei Wang</name>
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